PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10009764

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Protein Properties

Length: 230aa MW: 25636.7 Da PI: 10.4056

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10009764	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40	6.9e-13	133	216	1	90
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k ++ s+v+ +l lp f++ + +k ++ +tl de+g ++ + ++ + l++GWk+F+ a++L +gD ++F+l+ ++f Lus10009764 133 FVKSMLISHVSGGFWLGLPVWFCKPNL-PK-RDEVMTLIDEEGDEYPTIY--LPRKTG--LSGGWKGFAVAHNLADGDALIFQLITPTSF 216 8999*****************8884.43.5568***********..555544..*********************9976666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.06E-20	126	219	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-16	126	219	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.30E-23	131	218	No hit	No description
Pfam	PF02362	4.1E-11	133	217	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.828	133	224	IPR003340	B3 DNA binding domain
SMART	SM01019	6.1E-16	133	225	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MVAKAKQSNY EGLRLKRLEE NKKRMEALNL PMLSQSLRTT SPTPSPIKQS KLRPPVVEKQ 60 FVVVRRSSRV ANKPSPVYAE VIVERVVIPR RVSSKTRDLS NRVYASDEAR AEALEKAENL 120 QSSLQSQSHY PSFVKSMLIS HVSGGFWLGL PVWFCKPNLP KRDEVMTLID EEGDEYPTIY 180 LPRKTGLSGG WKGFAVAHNL ADGDALIFQL ITPTSFKVPL LLSLAAVFS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10009764

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012466565.1	1e-110	PREDICTED: B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	2e-75	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A0D2QCC6	1e-109	A0A0D2QCC6_GOSRA; Uncharacterized protein
STRING	Lus10009764	1e-167	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-74	B3 family protein

Link Out ? help Back to Top
Phytozome	Lus10009764

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]