PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10009907

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 308aa MW: 33696.6 Da PI: 6.1032

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10009907	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	7e-10	117	168	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + Lus10009907 117 KRAKRILANRQSAARSKERKARYIIELERKVQTLQTEATTLSAQLTLFQRDT 168 9****************************************99987766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.7E-16	113	177	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.53	115	178	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.54E-10	117	168	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-9	117	171	No hit	No description
Pfam	PF00170	1.2E-8	117	172	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.96E-23	118	167	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MSFRFPDDMT MMMMDLSPSG PMTPGAGGGD GGSSTCSLEE IGSEDDLFST YIDVDKLTGG 60 VNNSADQSNS TTPSSRPATK HRHSNSVDGS GMFGEIMDAK KAMPPEKLAD LWNVDPKRAK 120 RILANRQSAA RSKERKARYI IELERKVQTL QTEATTLSAQ LTLFQRDTSG LSTENTELKL 180 RLQALEQQAQ LRDALNDALK TEVERLKVAT GEMMSHSESF NLGMHQMPYS SSNFFPLPPQ 240 QSGHTRNMQL PHFSQHMQQP NSHPLSDAMQ SESLARFQGL DISNKGQPNI VKSEGSSICA 300 SESSSTF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10009907

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017082.1	1e-144	PREDICTED: transcription factor RF2b
Refseq	XP_024446725.1	1e-144	transcription factor RF2b
Swissprot	Q6S4P4	1e-97	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A1R3IK89	1e-145	A0A1R3IK89_COCAP; Uncharacterized protein
STRING	Lus10009907	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	3e-73	basic leucine-zipper 52

Link Out ? help Back to Top
Phytozome	Lus10009907

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]