PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009924
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 179aa    MW: 20820.3 Da    PI: 7.0401
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009924genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM661.1e-2061411128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevlsk 95 
                  lp G+rF+P+d++l+ +yL +k+++++    ++i+e+d+y+v e w+    ++++e+e+yf++k ++k++  +g++ +r     +Wk++ +d   ++ 
  Lus10009924   6 LPLGYRFEPSDSDLILNYLYPKATSSNSYQ-DFIPECDLYDVqESWKR--YFHGGETEMYFYTKLKRKKTekNGHHMERGYGGRVWKSQKEDLVYYTD 100
                  699********************9999655.99********9455655..5788999******9888876446889999888888***9998877776 PP

          NAM  96 ...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                     k++++  ++++ +       +g+  + ++ +Wvmhe+rl
  Lus10009924 101 negKKTKMRSRRSFSYKvtdgygEGTGDN-SNDEWVMHEFRL 141
                  75555557777788887776654444444.6899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-203143IPR003441NAC domain
PROSITE profilePS5100522.8196162IPR003441NAC domain
PfamPF023651.2E-137141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKIPGLPLGY RFEPSDSDLI LNYLYPKATS SNSYQDFIPE CDLYDVQESW KRYFHGGETE  60
MYFYTKLKRK KTEKNGHHME RGYGGRVWKS QKEDLVYYTD NEGKKTKMRS RRSFSYKVTD  120
GYGEGTGDNS NDEWVMHEFR LGEVLGGGKS KESDQFAWVF YSMVYIVYDC LHGCSIAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009924
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100099241e-131(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.13e-13NAC domain containing protein 57