PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009939
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 247aa    MW: 27966.2 Da    PI: 8.7557
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009939genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.85.1e-5491381128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL++  ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++  
  Lus10009939   9 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKEkcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIHLG 105
                  69****************************.9***************952444443456*************************************** PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++ +g++ktLvfy+grap+g+ktdW+mheyrl
  Lus10009939 106 NSQRIGMRKTLVFYTGRAPHGHKTDWIMHEYRL 138
                  *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-605158IPR003441NAC domain
PROSITE profilePS5100558.099158IPR003441NAC domain
PfamPF023652.1E-2810138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAGSGQLTVP PGFRFHPTDE ELLYYYLRKK VSYEAIDLDV IREVDLNKLE PWDLKEKCRI  60
GTGPQNEWYF FSHKDKKYPT GTRTNRATAA GFWKATGRDK AIHLGNSQRI GMRKTLVFYT  120
GRAPHGHKTD WIMHEYRLDD DNSDVQEDGW VVCRVFKKKN QVRGYLPQQV LGGGDEDQHH  180
HPAAATPMHN GHRHHIHDLL YNNDHCGAGG FDGSMHLPQL FSAESVAAAA PADGRRRSSS  240
SRSRES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-53616314170NO APICAL MERISTEM PROTEIN
1ut4_B3e-53616314170NO APICAL MERISTEM PROTEIN
1ut7_A3e-53616314170NO APICAL MERISTEM PROTEIN
1ut7_B3e-53616314170NO APICAL MERISTEM PROTEIN
3swm_A3e-53616317173NAC domain-containing protein 19
3swm_B3e-53616317173NAC domain-containing protein 19
3swm_C3e-53616317173NAC domain-containing protein 19
3swm_D3e-53616317173NAC domain-containing protein 19
3swp_A3e-53616317173NAC domain-containing protein 19
3swp_B3e-53616317173NAC domain-containing protein 19
3swp_C3e-53616317173NAC domain-containing protein 19
3swp_D3e-53616317173NAC domain-containing protein 19
4dul_A3e-53616314170NAC domain-containing protein 19
4dul_B3e-53616314170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009939
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521498.11e-127protein SOMBRERO isoform X2
SwissprotQ9MA171e-106SMB_ARATH; Protein SOMBRERO
TrEMBLB9S6791e-126B9S679_RICCO; NAC domain-containing protein, putative
STRINGLus100099390.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72043447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.33e-97NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]