PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009969
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 209aa    MW: 21620.5 Da    PI: 8.2454
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009969genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.32.3e-212471559
                 -TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY 15 vkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                  kg+++pr+YYrCt+a  Cpv+k+v+rsaed++++++tYeg+Hnh+
  Lus10009969  2 AKGNPCPRAYYRCTMAvACPVRKQVQRSAEDKSILITTYEGNHNHP 47
                 59**************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.6E-17148IPR003657WRKY domain
PROSITE profilePS5081121.677149IPR003657WRKY domain
PfamPF031065.0E-17247IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-19249IPR003657WRKY domain
SuperFamilySSF1182906.93E-17249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAKGNPCPRA YYRCTMAVAC PVRKQVQRSA EDKSILITTY EGNHNHPLPP AATAMAATTS  60
AAAAMLLSGS TTTTPNHHHP HFPFSSSSFL PHHHFPYSPT ATLSASAPFP TITLDLTNSP  120
PPPLQLVGHP LYSNDNKFSM PIVGCRDGGS TMMETVTAAI ASDPNFTVAL AAAVSKIMGG  180
GGSATASTTA VLPGSPQLPQ SCTTFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-142512876WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009969
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969824.11e-76PREDICTED: probable WRKY transcription factor 47
SwissprotQ9XEC31e-47WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A061DRV72e-75A0A061DRV7_THECC; WRKY family transcription factor, putative
STRINGLus100099691e-148(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.16e-38WRKY family protein