PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10010071

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

SBP

Protein Properties

Length: 862aa MW: 94043.2 Da PI: 5.858

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10010071	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.5	1.4e-41	146	223	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+++lv++++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Lus10010071 146 ACQVEDCGADLSKAKDYHRRHKVCEMHSKATKALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 223 5**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.3E-33	139	208	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.129	144	221	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.88E-38	146	225	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.0E-30	147	220	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence Send to blast
MEARFGTETA HFYGMSAMGM RTVGKGSLEW DLNDWKWDGD LFIASPLNSV PNSAAMSKQF 60 FPLATTGNSS NSSSSCSDEV HLELEKGRRE SEKRRRVIDL EEGNSNNDQE AGTLSLKIGG 120 HGGNWEGHSG KKTKLSGGSS SSSRAACQVE DCGADLSKAK DYHRRHKVCE MHSKATKALV 180 ANVMQRFCQQ CSRFHVLQEF DEGKRSCRRR LAGHNKRRRK TNPESGTTTN NVNDDQTGGY 240 LLISLLKTLS NMHSNKSDQT TEQDLLSHLL RGLAGHTIEQ GGRNISGILQ EPQELLNNGS 300 LLGIPKQQAQ LVRANGASMQ TSSSMKSRMT NNYPACSEVR ESNPGHMKMN NFDLNDAYID 360 SDDGTEDAER SPVPTNGGTS SLGCPSWAQQ DSQQSSPPQT SGNSDSTSPQ SPASSSGDAQ 420 CRTDRIVLKL FGKEPSDFPL VVRAQILDWL SHSPTDIESY IRPGCIVLTI YLRQDEAAWD 480 ELCCDLSNSL SRLLHASHDS FWSTGWIFVM VEHQIAFACD GQIVLDTSSP LRSIDCSSIF 540 SIKPIAVPAT VKVQFLVKGT NLSRPTTRMM CAIEGKYLVQ EEDSDDLVDA TGQGQLQCVP 600 FSCSIPTGHG RGFIEIEEHG ISNSFFPFIV AEEDVCSEIR TLEDALEFIE TDDDLGEGGR 660 VEAKNKAMEF IHEMDMAGPG GLTPLHIAAG KDGSEDVLDA LTNDSQMVGV EAWKKARDST 720 GFTPEDYARL RGHYSYIHLV QRKINSRKSS GSSHVVLDIP GGQETSPNQK QNEALSLALE 780 IAQTMSKPAG GGSSSNCNLC SRKVAYGVSS SRRSLLYRPA MLSMVAVAAV CVCVALLFKS 840 CPEVVYVLSP FRWEMLEFGT S*

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence Send to blast

MEARFGTETA HFYGMSAMGM RTVGKGSLEW DLNDWKWDGD LFIASPLNSV PNSAAMSKQF  60
FPLATTGNSS NSSSSCSDEV HLELEKGRRE SEKRRRVIDL EEGNSNNDQE AGTLSLKIGG  120
HGGNWEGHSG KKTKLSGGSS SSSRAACQVE DCGADLSKAK DYHRRHKVCE MHSKATKALV  180
ANVMQRFCQQ CSRFHVLQEF DEGKRSCRRR LAGHNKRRRK TNPESGTTTN NVNDDQTGGY  240
LLISLLKTLS NMHSNKSDQT TEQDLLSHLL RGLAGHTIEQ GGRNISGILQ EPQELLNNGS  300
LLGIPKQQAQ LVRANGASMQ TSSSMKSRMT NNYPACSEVR ESNPGHMKMN NFDLNDAYID  360
SDDGTEDAER SPVPTNGGTS SLGCPSWAQQ DSQQSSPPQT SGNSDSTSPQ SPASSSGDAQ  420
CRTDRIVLKL FGKEPSDFPL VVRAQILDWL SHSPTDIESY IRPGCIVLTI YLRQDEAAWD  480
ELCCDLSNSL SRLLHASHDS FWSTGWIFVM VEHQIAFACD GQIVLDTSSP LRSIDCSSIF  540
SIKPIAVPAT VKVQFLVKGT NLSRPTTRMM CAIEGKYLVQ EEDSDDLVDA TGQGQLQCVP  600
FSCSIPTGHG RGFIEIEEHG ISNSFFPFIV AEEDVCSEIR TLEDALEFIE TDDDLGEGGR  660
VEAKNKAMEF IHEMDMAGPG GLTPLHIAAG KDGSEDVLDA LTNDSQMVGV EAWKKARDST  720
GFTPEDYARL RGHYSYIHLV QRKINSRKSS GSSHVVLDIP GGQETSPNQK QNEALSLALE  780
IAQTMSKPAG GGSSSNCNLC SRKVAYGVSS SRRSLLYRPA MLSMVAVAAV CVCVALLFKS  840
CPEVVYVLSP FRWEMLEFGT S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-31	137	220	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	96	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10010071

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021676158.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A0B0MYY2	0.0	A0A0B0MYY2_GOSAR; Squamosa promoter-binding-like protein 1
STRING	Lus10010071	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	Lus10010071

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]