PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010098
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 163aa    MW: 18501.8 Da    PI: 9.9864
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010098genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.61.4e-243110950127
          NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                  +v+++e  wy  s+ d kya++k+ nr+tk+gyWk tgk + v +k +++++g+kktLvfykgr +kg++t+W+mhey+
  Lus10010098  31 EVEHDEAIWYVLSPPDYKYANSKQVNRKTKAGYWKPTGKARIVRAKsSRNQIGTKKTLVFYKGRVRKGVRTQWIMHEYK 109
                  455566789*********************************999877889***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.0411128IPR003441NAC domain
PfamPF023653.6E-1330109IPR003441NAC domain
SuperFamilySSF1019418.89E-2634128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MEVAPHLDLA FVAAEMGSPH TCHSFRKASS EVEHDEAIWY VLSPPDYKYA NSKQVNRKTK  60
AGYWKPTGKA RIVRAKSSRN QIGTKKTLVF YKGRVRKGVR TQWIMHEYKS SSTFPHQRDF  120
LLYKLMKKSS SEGTSNGGDY EDDGETSSSN FESFPFNSYS QL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-183613170168NO APICAL MERISTEM PROTEIN
1ut4_B5e-183613170168NO APICAL MERISTEM PROTEIN
1ut7_A5e-183613170168NO APICAL MERISTEM PROTEIN
1ut7_B5e-183613170168NO APICAL MERISTEM PROTEIN
4dul_A5e-183613170168NAC domain-containing protein 19
4dul_B5e-183613170168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010098
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035223.11e-35PREDICTED: NAC domain-containing protein 45-like isoform X1
RefseqXP_011035229.11e-35PREDICTED: NAC domain-containing protein 45-like isoform X1
RefseqXP_011035239.11e-35PREDICTED: NAC domain-containing protein 45-like isoform X1
TrEMBLB9GPV53e-32B9GPV5_POPTR; Uncharacterized protein
STRINGLus100100981e-119(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.13e-24NAC domain containing protein 69