PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010113
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 339aa    MW: 36676.7 Da    PI: 8.5084
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010113genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.22e-3954115263
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                  ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  Lus10010113  54 PQEQVNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTAGGSLRNVPVGGGSRKNKRSSS 115
                  6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-2353103IPR003851Zinc finger, Dof-type
PfamPF027013.9E-3356112IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.13458112IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106096IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEETVTSASN VNTNNYMINN NSNNNNNSNM SGNIPKAGGE TGGDVHNKKA AVRPQEQVNC  60
PRCNSTNTKF CYYNNYSLTQ PRYFCKSCRR YWTAGGSLRN VPVGGGSRKN KRSSSLPSPS  120
SSITNTSTTS SSSGTNKLTT IPDLNPPSFS SQNPKAFQGQ DLNLGFPPIH QDTSTAPQAG  180
LEVLRNNGMA ANNPTRGFNS FISNPAMASS ADNNRHPNPV LYSSNISSSS SAAGFHMQEE  240
FKPSTLNFSI DHHHQQQQHH HHHGIDEQES GGEMDNVGRI LFPFGDHHHH HHLKQQQQHQ  300
IHGGKGQQEH GHHVDHNNTS GGGGGGYWSG MLGGSGAW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010113
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306645.18e-63PREDICTED: dof zinc finger protein DOF3.7
TrEMBLA0A2P6SIQ87e-60A0A2P6SIQ8_ROSCH; Putative transcription factor C2C2-Dof family
STRINGLus100101130.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.38e-45Dof family protein