PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010238
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 306aa    MW: 33141.5 Da    PI: 7.8781
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010238genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181156147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + 
      Lus10010238 11 KGPWSPEEDEALQRLVQTYGPRNWTLISKSIP-GRSGKSCRLRWCNQ 56
                     79******************************.***********985 PP
2Myb_DNA-binding59.38.4e-1965107347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+++++a++++G++ W+tIar ++ gRt++++k++w++ 
      Lus10010238  65 PFTPEEDDIIIKAHARFGNK-WATIARLLN-GRTDNSIKNHWNST 107
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.192657IPR017930Myb domain
SuperFamilySSF466896.74E-338104IPR009057Homeodomain-like
SMARTSM007173.7E-171059IPR001005SANT/Myb domain
PfamPF002492.2E-181156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-261264IPR009057Homeodomain-like
CDDcd001672.91E-161355No hitNo description
PROSITE profilePS5129425.68558112IPR017930Myb domain
SMARTSM007174.7E-1662110IPR001005SANT/Myb domain
PfamPF002493.1E-1665107IPR001005SANT/Myb domain
CDDcd001674.97E-1365108No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2465111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAASKETDRI KGPWSPEEDE ALQRLVQTYG PRNWTLISKS IPGRSGKSCR LRWCNQLSPE  60
VEHRPFTPEE DDIIIKAHAR FGNKWATIAR LLNGRTDNSI KNHWNSTLKR KCDGTTSLAE  120
QPPLKRSASL GAGSNFSGLY LNPSSPSGSD LSDSSLHGND SSSPVYRPLA RTASLIPPTL  180
SMDVSSSIRD PLTSLSLSLP GSDLPETLDA GSALGLCALP AAPVAASPPN AVTVEQQAPI  240
MQEKAEVGLE KQMFNPEFLG VMQEMIRKEV RSYMSGIEKK GLCFQAESIG NAVVERIGIT  300
RSRIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-42101123105MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-42101123105C-Myb DNA-Binding Domain
1msf_C7e-42101123105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010238
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8298651e-128EU829865.1 Linum usitatissimum clone LU0013B04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451715.11e-148transcription factor MYB44
SwissprotO231604e-89MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2K2BHP51e-147A0A2K2BHP5_POPTR; Uncharacterized protein
STRINGLus100102380.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-73myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]