PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010361
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family YABBY
Protein Properties Length: 256aa    MW: 28225.2 Da    PI: 8.8492
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010361genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY25.54.2e-082252635
        YABBY  6 sseqvCyvqCnfCntilav.svPstslfkvv 35
                  s+q+Cyv+C++C+t+lav ++P+  l+ ++
  Lus10010361 22 LSDQLCYVHCKYCDTVLAVlTLPFPLLIIII 52
                 69***************99456766655554 PP
2YABBY136.14.2e-42127190107170
        YABBY 107 eevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  + +p++ pv+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  Lus10010361 127 DTTPKPAPVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 190
                  5679999*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.7E-52251IPR006780YABBY protein
PfamPF046901.9E-38131190IPR006780YABBY protein
SuperFamilySSF470957.85E-8134184IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.7E-4139182IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSSSSASAAS LSPDHHHLSG ALSDQLCYVH CKYCDTVLAV LTLPFPLLII IIIISSRGHE  60
EHFSTAADDD QQRRRKQKPP ATPRLENPPP LRHQQLGLND VVSSPFMPIR GGGSGGGGGT  120
MGLGFEDTTP KPAPVNRPPE KRQRVPSAYN RFIKDEIQRI KAGNPDISHR EAFSAAAKNW  180
AHFPHIHFGL MPDHQPVKKP NLLQQWAHFP HIHFGLMPDH QPVKKPNLLQ QEAEDQMALI  240
KDGFFPPANL GVTPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17176QRRRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010361
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027335074.12e-61axial regulator YABBY 1 isoform X1
TrEMBLA0A1Q3BV983e-59A0A1Q3BV98_CEPFO; YABBY domain-containing protein
TrEMBLU5FUY22e-59U5FUY2_POPTR; Uncharacterized protein
STRINGLus100103610.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20403490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.15e-52YABBY family protein