PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010371
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 144aa    MW: 16451.3 Da    PI: 7.8685
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010371genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.77.6e-2651431122
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknr.atks 80 
                  lp G++F P+d++l+++yL++k +g+           e      ike+d+y++eP dLp+        k+++++w+ ++k + + ++++r nr  +k 
  Lus10010371   5 LPSGCQFYPSDQQLLCYYLTNKNHGDGagcnqqE---EtngydLIKELDLYDHEPFDLPEhscysfGPKGRKTHWFCYAKIRVS-KEENRGNRsRAKG 98 
                  699********************99997765441...1455548**************95455543223355566666665444.4567888877899 PP

          NAM  81 gyWkatgkdkevlsk..kgelvglkktLvfykg.rapkgektdWv 122
                  gyW+  gk  +v+++  +++ vg+++ +vfy g + +++++t+W+
  Lus10010371  99 GYWRRLGKVSDVVESgwNSAIVGTRTQFVFYLGnSVKSATRTEWI 143
                  **************9888999**********883567788****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-243143IPR003441NAC domain
PROSITE profilePS5100528.1495143IPR003441NAC domain
PfamPF023653.5E-136143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSFDLPSGCQ FYPSDQQLLC YYLTNKNHGD GAGCNQQEET NGYDLIKELD LYDHEPFDLP  60
EHSCYSFGPK GRKTHWFCYA KIRVSKEENR GNRSRAKGGY WRRLGKVSDV VESGWNSAIV  120
GTRTQFVFYL GNSVKSATRT EWI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010371
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068313.14e-61NAC domain-containing protein 83
TrEMBLR4N5R68e-60R4N5R6_JATCU; NAC transcription factor 061
STRINGLus100103711e-105(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130012628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.16e-16NAC domain containing protein 28