PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010632
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 212aa    MW: 22742.8 Da    PI: 5.595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010632genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-184393155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 + ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  +Aa a++ a++kl+g
  Lus10010632 43 CSYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHDAALAYDTAARKLYG 93
                 67*****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-134393IPR001471AP2/ERF domain
CDDcd000188.19E-2943103No hitNo description
SuperFamilySSF541713.47E-2144102IPR016177DNA-binding domain
PROSITE profilePS5103222.06244101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3044102IPR001471AP2/ERF domain
SMARTSM003801.2E-3544107IPR001471AP2/ERF domain
PRINTSPR003671.3E-94556IPR001471AP2/ERF domain
PRINTSPR003671.3E-96783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSTSSSSTGE PGSNWNPHMK KAAQASSRKG CMRGKGGPEN ALCSYKGVRQ RTWGKWVAEI  60
REPNRGARLW LGTFDTSHDA ALAYDTAARK LYGPHAKLNL PNHNDVVHVP KQDSGDATTT  120
TSSSFDMPAG YYNNYSSNSS SEEGISSSSY DNYNEIGVGN EFWSNLQVNL PLFDESIWAE  180
AAMSLDYFPV VAMDGGQLAG GWDAASASAP N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1845101663ATERF1
3gcc_A2e-1845101663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010632
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022772142.13e-65dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ27e-54DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A1U8PEC91e-60A0A1U8PEC9_GOSHI; dehydration-responsive element-binding protein 2D-like
STRINGLus100106321e-156(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.19e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]