PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010638
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 432aa    MW: 46442.8 Da    PI: 7.1237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010638genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000523083461255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ +++  L++l+ +      +K + a++L +A+ YI+ Lq
  Lus10010638 308 RKEKLGDRITALQQLVAPF-----GKTDTASVLMEAIGYINFLQ 346
                  677888999*******998.....8*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.484296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.89E-5306350No hitNo description
SuperFamilySSF474592.36E-10306357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-8310353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDESSGNHQL RHHQLQVVGG SSSSSSSSSF SSQPSSSAAP RSNNLYGGAT GGDHGWTQNF  60
TFCNPLNNHY PSDGGLVNPA RNHHQDHLSF QWNTNSHRFT AATSAAVKDE EGSSLSSSTT  120
TTSSDPFPRF TDMLITNDDS SASSSIVVSD NSSSSSFGYH HYSHGGHYQF LPFNPNSSGS  180
SSSLIYPSIN VSSLNQTDVN LQALDQNLLF AGTSLLRDHH QGIINPYPAA DPMPQYCTPT  240
TTKVSSTSEM RENSERVAST ERDQVKRCNS GSIVKEQSST TVQLQASTAN KKSKVDQPRA  300
SCPPFKVRKE KLGDRITALQ QLVAPFGKTD TASVLMEAIG YINFLQNQVE TLSVPYMKST  360
RNKPPQSTHF QQAEGGTGEV SSRDLRSRGL CLVPLSCTSY ITNIDTGAAG GYSGAMWPPP  420
PPHFGQGTYN L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010638
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100106380.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.13e-50bHLH family protein