PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10010747

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 195aa MW: 22320.8 Da PI: 4.7919

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10010747	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.8	1.1e-32	3	120	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ k+ +e ++wyf+s++ nr+t++g Wk+ g +++++s+ + Lus10010747 3 LPPGFRFYPTDEELVVHFLHRKATLLPCHP-DVIPDLDLYPYDPWDLHGKALEEGNQWYFYSRKT--------LNRVTDNGLWKTIGMEEPIISSsgN 91 79***********************999.99**********977777899*9974........58***************9777 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ vg+kk L+f+ g + kt+W+m+e+rl Lus10010747 92 NRRVGVKKYLMFFLGGDV---KTNWIMEEFRL 120 778******77665...6******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-44	1	159	IPR003441	NAC domain
PROSITE profile	PS51005	42.588	3	160	IPR003441	NAC domain
Pfam	PF02365	2.2E-20	4	120	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MNLPPGFRFY PTDEELVVHF LHRKATLLPC HPDVIPDLDL YPYDPWDLHG KALEEGNQWY 60 FYSRKTLNRV TDNGLWKTIG MEEPIISSSG NNRRVGVKKY LMFFLGGDVK TNWIMEEFRL 120 PDSSSTTTGT SSSTSRSSRS TRSRSRPDYN KWVVCRVYER NSSDDDEDGS TGLSCLDEVF 180 LSLDDLDDIS LPYN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-34	1	163	15	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-34	1	163	15	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-34	1	163	15	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-34	1	163	15	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-34	1	163	18	171	NAC domain-containing protein 19
3swm_B	2e-34	1	163	18	171	NAC domain-containing protein 19
3swm_C	2e-34	1	163	18	171	NAC domain-containing protein 19
3swm_D	2e-34	1	163	18	171	NAC domain-containing protein 19
3swp_A	2e-34	1	163	18	171	NAC domain-containing protein 19
3swp_B	2e-34	1	163	18	171	NAC domain-containing protein 19
3swp_C	2e-34	1	163	18	171	NAC domain-containing protein 19
3swp_D	2e-34	1	163	18	171	NAC domain-containing protein 19
4dul_A	1e-34	1	163	15	168	NAC domain-containing protein 19
4dul_B	1e-34	1	163	15	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10010747

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028753201.1	6e-90	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	6e-88	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A3P6AL41	2e-88	A0A3P6AL41_BRACM; Uncharacterized protein
TrEMBL	M4ESY5	2e-88	M4ESY5_BRARP; Uncharacterized protein
STRING	Lus10010747	1e-141	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-67	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Lus10010747

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]