PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10010851

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

WRKY

Protein Properties

Length: 231aa MW: 25658.4 Da PI: 5.7287

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10010851	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99	3e-31	55	111	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK +k+s++prsYY+Ct ++C++kk+vers++++++++itYeg H h Lus10010851 55 DDGYKWRKYGQKAIKNSPYPRSYYKCTNRRCSAKKQVERSRDEQDTLIITYEGLHLH 111 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.6E-29	49	111	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-26	49	111	IPR003657	WRKY domain
PROSITE profile	PS50811	27.026	49	114	IPR003657	WRKY domain
SMART	SM00774	7.2E-34	54	113	IPR003657	WRKY domain
Pfam	PF03106	2.3E-25	55	111	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MQYSGATVAA IQDALPLKTW SILNSPSSLL ERGINRINGS KYTMKLKCFE NGMADDGYKW 60 RKYGQKAIKN SPYPRSYYKC TNRRCSAKKQ VERSRDEQDT LIITYEGLHL HFAYPYYFPL 120 NPDDGEDHHP PPPPKRTKTT SPEAELAEAE AEAEQSRFGG EEDGLFEMKA ADSSQGLLED 180 VVLPFVIRYP ATVDNVNSSS RTSSSNLLIS NSCSSTSSSL SWSSSSQDSE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-19	50	111	13	74	Probable WRKY transcription factor 4
2lex_A	1e-19	50	111	13	74	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10010851

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007140517.1	9e-59	hypothetical protein PHAVU_008G119400g
Refseq	XP_028240309.1	1e-58	probable WRKY transcription factor 49 isoform X2
TrEMBL	A0A371FUZ6	1e-58	A0A371FUZ6_MUCPR; Putative WRKY transcription factor 49 (Fragment)
STRING	Lus10010851	1e-172	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7118	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	2e-41	WRKY DNA-binding protein 49

Link Out ? help Back to Top
Phytozome	Lus10010851