PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011031
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 369aa    MW: 41609 Da    PI: 6.7496
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011031genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.5e-151766148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +lvd+++   g+  +Wk+ ++  g+ R++k+c++rw +yl
      Lus10011031 17 KGPWTVEEDSKLVDYIANKKGRhaNWKLLPKLAGLDRCGKSCRLRWTNYL 66
                     79**********************************************97 PP
2Myb_DNA-binding51.81.8e-1672116147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg + +eE+ l+vd++k lG++ W++Ia +++ gRt++++k++++++
      Lus10011031  72 RGGFDEEEERLIVDLHKALGNK-WSRIATHLP-GRTDNEIKNYYNTH 116
                      67899*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8671266IPR017930Myb domain
SMARTSM007172.5E-91668IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-2516113IPR009057Homeodomain-like
PfamPF002491.4E-121766IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-201873IPR009057Homeodomain-like
CDDcd001679.13E-81966No hitNo description
PROSITE profilePS5129424.36467121IPR017930Myb domain
SMARTSM007171.3E-1571119IPR001005SANT/Myb domain
PfamPF002493.4E-1472116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2574121IPR009057Homeodomain-like
CDDcd001679.41E-1275117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MVRPPCCGEE DKMIVKKGPW TVEEDSKLVD YIANKKGRHA NWKLLPKLAG LDRCGKSCRL  60
RWTNYLRPGI KRGGFDEEEE RLIVDLHKAL GNKWSRIATH LPGRTDNEIK NYYNTHIRRK  120
LLRMGIDPHT HQPRTDHLHQ QQDIANQIVN FSQMIGAANQ LSNIMNIDSS SSSTLNILEN  180
LRVAASTTMQ QRVVTHFVLQ QLLFNNNQTA SHSPPLLLQG QDSAPTRILS LEDQLLLLAR  240
VLNPVVNLTT TDYQKSVYKP FHLSIADNND KSKSENDVKT LIVKKELMLP ELASCEASPE  300
TSSSSLVHSN HQENDHCSNF PDKTPTLFDS PVASIDIDSQ LEAWERLLMM DDDFTGGDGF  360
FSSTWTDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27171217108B-MYB
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011031
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9S9Z27e-67MYB93_ARATH; Transcription factor MYB93
STRINGLus100110310.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-67myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]