PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011065
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 459aa    MW: 50063.1 Da    PI: 4.5867
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011065genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35431342102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++ + ++sws+++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+ i 
   Lus10011065  43 FLSKTYDMVDDPACDAVVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKGIT 130
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Lus10011065 131 RRKP 134
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3935126IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.07E-3639132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-6139132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-194366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3143132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-1994106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MDGAAVATKG GGGGGSPDAS TSGASGAAAP VPIPSQSNAP PPFLSKTYDM VDDPACDAVV  60
SWSSTNNSFV VWNPPEFARD LLPKYFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEGFLR  120
GQKHLLKGIT RRKPPQQQAQ PSNGQTSSSV GAACVEVGKF GLEAEVERLK RDKNVLMQEL  180
VRLRQQQQAT DGQLQTMTQR LQGMEQRQQQ MMSFLAKAMQ SPGFLAQFVQ QQNENSRRIS  240
ESSKKRRLKQ DGVTENENES SGGVSDGQQI VKYQPLMNEA AKSMLRQIMK LDGSSKSESY  300
NDIFDGFSSS DGGKSSAHRV SGVTLQEVPP TSGLPDHLAS ASVPIPTTDV MMPDLDQIPE  360
MVPESIPDLQ GGGFMEPDTG KDCFPPMMNG TIPLDIDIIS ADPDDSFDVL LDHDFCWDIL  420
QSPIPDEIDP SKVAKPMENM DQLTQQMGLL SPDAEKLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-262613219129Heat shock factor protein 1
5d5v_B2e-262613219129Heat shock factor protein 1
5d5v_D2e-262613219129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243248KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011065
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018512.10.0PREDICTED: heat stress transcription factor A-1d isoform X1
SwissprotQ9LQM71e-151HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A2P2N0I10.0A0A2P2N0I1_RHIMU; Heat stress transcription factor A-1d isoform X1
STRINGLus100110650.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-112heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]