PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011114
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 165aa    MW: 18951.6 Da    PI: 6.5356
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011114genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.4e-1354155294
                  EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS.SE CS
           B3   2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr.se 89 
                  +k+lt sdv+ s +rl+l k++a++         ++  +++ +t++d +g+++ ++l+ +  +  y+lt+GW+ F+++++L    Dfv   + +r ++
  Lus10011114  54 EKQLTESDVNPSqARLSLRKDYARDSilpllnsTEDVVRGIRVTVNDADGKEFPMQLKLWAEK-VYMLTSGWRPFAEDHRLVsYEDFVAVWVFRRlDT 150
                  79*******98879*********999***998844446999****************999986.8****************94566664443345555 PP

                  E..EE CS
           B3  90 felvv 94 
                  ++l+v
  Lus10011114 151 GSLCV 155
                  55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1553155IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1353145IPR015300DNA-binding pseudobarrel domain
CDDcd100178.04E-1353157No hitNo description
SMARTSM010190.002653157IPR003340B3 DNA binding domain
PROSITE profilePS5086310.15154161IPR003340B3 DNA binding domain
PfamPF023623.2E-1054140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MYSDTERQNT LPIPPDEKTP KLTREQHWRP PRIRPPAIPG LPEFLVGDCT EPYEKQLTES  60
DVNPSQARLS LRKDYARDSI LPLLNSTEDV VRGIRVTVND ADGKEFPMQL KLWAEKVYML  120
TSGWRPFAED HRLVSYEDFV AVWVFRRLDT GSLCVAVTTR RLPV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011114
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448606.11e-43PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLA0A0D2U8062e-42A0A0D2U806_GOSRA; Uncharacterized protein
STRINGLus100111141e-118(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.12e-25B3 family protein