PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011123
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 173aa    MW: 18029.4 Da    PI: 12.0698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011123genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-1969119155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Lus10011123  69 PVYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKG 119
                  68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-1369119IPR001471AP2/ERF domain
PROSITE profilePS5103222.78770129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3070130IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2070129IPR016177DNA-binding domain
SMARTSM003801.0E-3370135IPR001471AP2/ERF domain
PRINTSPR003672.1E-107182IPR001471AP2/ERF domain
CDDcd000184.39E-2771129No hitNo description
PRINTSPR003672.1E-1093109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MAAADSPPPP TASSSSSSSS SSGFSGQPIP DPEPNKTNSN INNNKSKLKR GRGDGGSGGG  60
GSGRTTKHPV YRGVRMRTWG KWVSEIREPR KKSRIWLGTF ATPEMAARAH DVAALSIKGP  120
AAAAILNFPQ LSASLPRPVS SSPATSGPLP SKPPPWTSPP PPWLLLRISF AR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1960130473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011123
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380474.12e-41PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ9LYD32e-41DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2G9GZF41e-41A0A2G9GZF4_9LAMI; Uncharacterized protein
STRINGLus100111231e-116(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]