PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011185
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 205aa    MW: 23782.9 Da    PI: 9.7601
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011185genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.5e-36331232101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++le+++  ++isw+e+g+ fvv+ + ef++++Lp+yFkh+nf+SF+RQLn+YgF+kv++++         weFkh++F++g++++l +i 
   Lus10011185  33 FLSKTYDLLEERSEGRIISWNEDGSGFVVWSPAEFSEQMLPRYFKHNNFSSFIRQLNTYGFRKVSSKR---------WEFKHDKFRRGDRDMLVEIA 120
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   rk+
   Lus10011185 121 RKR 123
                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3729117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-4829122IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.03E-3129122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-3233122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-183356IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-188496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MNTVSGYPAA MDVNQAAAAA STGRGLVRGP APFLSKTYDL LEERSEGRII SWNEDGSGFV  60
VWSPAEFSEQ MLPRYFKHNN FSSFIRQLNT YGFRKVSSKR WEFKHDKFRR GDRDMLVEIA  120
RKRCEPSAFP SYLKAANSNE ETSENDHHKR NIRLMMMEEN SNLRKEKLEL ETQIAEFRDL  180
KLKLLDFVGQ YVQKDQQVKN RRTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B1e-21301223105Heat shock factor protein 2
5d8l_B1e-21301223105Heat shock factor protein 2
5d8l_D1e-21301223105Heat shock factor protein 2
5d8l_F1e-21301223105Heat shock factor protein 2
5d8l_H1e-21301223105Heat shock factor protein 2
5hdk_A1e-21301228110Heat shock factor protein 2
5hdk_B1e-21301228110Heat shock factor protein 2
5hdk_C1e-21301228110Heat shock factor protein 2
5hdk_D1e-21301228110Heat shock factor protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011185
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506614.12e-76heat stress transcription factor B-2a
RefseqXP_023877712.11e-76heat stress transcription factor B-2a-like
TrEMBLA0A1S3UKY94e-75A0A1S3UKY9_VIGRR; heat stress transcription factor B-2a
STRINGLus100111851e-153(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.18e-43heat shock transcription factor B2A