PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011326
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YA
Protein Properties Length: 271aa    MW: 31007.4 Da    PI: 8.77
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011326genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.87.6e-33164220158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k rkpylheSRh hA+rR+Rg+gGrF
  Lus10011326 164 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKVRKPYLHESRHLHAMRRERGCGGRF 220
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-36162223IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.559163223IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.5E-28165220IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.6E-24166188IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860168188IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.6E-24197220IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MMYRKLDHEA ANQQHQYNQH YESSNSRPIW YSNTNGNNGG IMPEKLGEIS TIDFSQLGCN  60
SSSRYDVPDS KFTDSKPQFW LSDGIDNTER ILQQTLDPES DLSGSRQGCQ QQHHHHPEAI  120
NEFIGLQPQL DSSIGLSFVD PQYLGVDVHP NKMAVPVPVE LPEEEPVYVN AKQYHGILRR  180
RQSRAKAELE KKVVKVRKPY LHESRHLHAM RRERGCGGRF LSTKKNHHHH HQHQQQQIGE  240
GSSADNKNSK SSHVNPTGNI WMDGKRRIRN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21164232270NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011326
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396059.13e-40PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X2
RefseqXP_021660900.14e-40nuclear transcription factor Y subunit A-9-like
TrEMBLA0A1U8NXG23e-37A0A1U8NXG2_GOSHI; nuclear transcription factor Y subunit A-1-like isoform X2
STRINGLus100113260.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.12e-20nuclear factor Y, subunit A7