PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011352
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CAMTA
Protein Properties Length: 1077aa    MW: 120831 Da    PI: 6.7548
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011352genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1166.25.5e-521963112116
         CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                  l+e ++rwlk+ e+  iL+n+ek+++t++++ rp+ gsl+Lyn++++r+frkD ++w+kkkdg+tv E+hekLKvg+ve l+cyYah+ee p+fqrr+
  Lus10011352 196 LQEaQHRWLKPVEVFFILQNHEKYKFTEKTPIRPSAGSLFLYNKRVTRFFRKDDHNWRKKKDGRTVAEAHEKLKVGNVERLNCYYAHGEEIPHFQRRS 293
                  56669********************************************************************************************* PP

         CG-1  99 ywlLeeelekivlvhyle 116
                  yw+Le  ++++vlvhy++
  Lus10011352 294 YWMLEPPYDHVVLVHYRD 311
                  ****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.123192318IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-66195313IPR005559CG-1 DNA-binding domain
PfamPF038596.3E-44198311IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.3E-5503592IPR013783Immunoglobulin-like fold
SuperFamilySSF812969.33E-15506590IPR014756Immunoglobulin E-set
PfamPF018331.1E-6506590IPR002909IPT domain
Gene3DG3DSA:1.25.40.201.6E-15701798IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.043703795IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.44E-16705798IPR020683Ankyrin repeat-containing domain
CDDcd002041.11E-13723795No hitNo description
PfamPF127961.9E-7730797IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.22736768IPR002110Ankyrin repeat
SMARTSM002484.6E-5736765IPR002110Ankyrin repeat
SMARTSM00248780775804IPR002110Ankyrin repeat
SMARTSM0001528855877IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.187856885IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525407.43E-7858878IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001541909931IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525407.43E-7910962IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.272912939IPR000048IQ motif, EF-hand binding site
PfamPF006120.11913930IPR000048IQ motif, EF-hand binding site
SMARTSM000153.2E-5932954IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.993933957IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-5935954IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1077 aa     Download sequence    Send to blast
MMRRQQQQQD QHSRAFHELT NMVFNLLRSP PTPIQFSDHF PAAVSSSPPP RSLRSAKITP  60
AGFASLLLGV SLAMMLCGSV TFFIGFILMP WVLGLVMVFY VAGIVSMIAM LGRSLLCFAA  120
GPPPPPRKDI PVFLWIIRFQ LSNENLGVLI GERLTESKTL YLSSRILEMT RIVSRLFPII  180
VNQPGPDQGY DINQLLQEAQ HRWLKPVEVF FILQNHEKYK FTEKTPIRPS AGSLFLYNKR  240
VTRFFRKDDH NWRKKKDGRT VAEAHEKLKV GNVERLNCYY AHGEEIPHFQ RRSYWMLEPP  300
YDHVVLVHYR DINEGITPSG SLVQSTPGAS SHLGPSPSYN TTPNQGSTQP ISNSYEPYTN  360
SSSPGSTEVT SEILIKGNEG FSTTKFAAEK NDVNQYLRSL KKNLSLDDDM VTGLDLFDEG  420
PLNHGYDDAF EQEKMTSALK TEPVEEFQHS QWLNFDQINY GAAAAVSGPG VGKSEVRDVN  480
LDSYGMPFSH GQADSRLAIA QHNKFTIRKI SPEWGYCNEI TKVLIVGFFL CDPSESAWTC  540
MFGDKEVPLE IIQEGVLQCA TPLEMPPGKV SICITSGNRQ PCSEIGQFEF RNKSSCDIVH  600
QLLERSAEEM LSLVRLVEML LSGSSLPKLN DEESGLDQPG ILKLQSDEDS WVQVIEALLV  660
GNGTSSDTVY WLLEQLLKDK LHRWLSSKYN RFDYQDGCLL SKKEQGIIHM VAGLGFEWAL  720
TPILNHGLSV DFRDINGWTA LHWAARFGRE KMVAALIASG ASPRAVTDPS SQDPAGKTPA  780
SIAAINGHHG LAGYLSELAL TTHLSSLTLE ESELSKGSAE VEAERTVVDS ISNVNFPASF  840
EDQVSINTTL AAVRNSAQAA ARIQSAFRAH SFRKRQQRET AVRDEYGIPS SEIQELSALS  900
KMAFGNARDY GTAALSIQKK YRGWKNRQDF LTLKKKVVKI QAHVRGYQVR KHYRVICWAV  960
GIIDKVVLRW RRKGAGLRNF RNKAEQPIVE DEESDEDILK VFRKQKVDGA IDEAVSRVLS  1020
MVHSPDARDQ YQRMLERYKQ AKAELATTSE AGTLDQPDNT NNEFEMDDED LQQYFQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011352
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229867.10.0calmodulin-binding transcription activator 4 isoform X3
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1Q3DAL60.0A0A1Q3DAL6_CEPFO; IQ domain-containing protein/TIG domain-containing protein/CG-1 domain-containing protein/Ank_2 domain-containing protein
STRINGLus100113520.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]