PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011426
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 799aa    MW: 87947.6 Da    PI: 6.8736
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011426genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox535.7e-171977357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l+ ++++ps  +r++  + +    +++ +q+kvWFqNrR +ek+
  Lus10011426 19 KYVRYTPEQVEALERLYLECPKPSSIRRQQFIRDCpilsNIEPKQIKVWFQNRRCREKQ 77
                 5679*****************************************************97 PP
2START184.55.7e-581633712205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v+ +   g+++l +++
  Lus10011426 163 IAEETLTEFISKATGTAVEWVQMPGMKPGPDSIGIVAISHGCIGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRSVDVVNVLPTTngGTIELLYMQ 259
                  789*******************************************************.8888888888***************87667********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p Rdf+++Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+hvdl+ ++++++lr+l++s+++ 
  Lus10011426 260 LYAPTTLAPaRDFWSLRYTSVLEDGSLVICERSLKNTQNGPSmppAQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLEPWSVPEVLRPLYESSTVL 357
                  ****************************************999999**************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++kt++a+l+++++
  Lus10011426 358 AQKTTMAALRHLRQ 371
                  *********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.7061478IPR001356Homeobox domain
SMARTSM003896.2E-131682IPR001356Homeobox domain
SuperFamilySSF466898.55E-151880IPR009057Homeodomain-like
CDDcd000863.15E-141979No hitNo description
PfamPF000461.6E-142077IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-172177IPR009057Homeodomain-like
CDDcd146861.02E-571110No hitNo description
PROSITE profilePS5084826.049153381IPR002913START domain
CDDcd088751.29E-81157373No hitNo description
SuperFamilySSF559612.75E-39162374No hitNo description
SMARTSM002347.4E-44162372IPR002913START domain
Gene3DG3DSA:3.30.530.202.2E-23162368IPR023393START-like domain
PfamPF018521.3E-55163371IPR002913START domain
PfamPF086701.4E-50653797IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MSYKDGNKNA QMGNLDNGKY VRYTPEQVEA LERLYLECPK PSSIRRQQFI RDCPILSNIE  60
PKQIKVWFQN RRCREKQRKE SSRLQGVNRK LTAMNKLLME ENDRLQKQVS HLVYENSYFR  120
QHTQKTTLST KDAVCDSVVT TGQHHLTPQH PPRDASPAGL LSIAEETLTE FISKATGTAV  180
EWVQMPGMKP GPDSIGIVAI SHGCIGVAAR ACGLVGLEPT RVAEILKDRP SWFRDCRSVD  240
VVNVLPTTNG GTIELLYMQL YAPTTLAPAR DFWSLRYTSV LEDGSLVICE RSLKNTQNGP  300
SMPPAQHFVR AEMLPSGYLI RPCEGGGSII HIVDHVDLEP WSVPEVLRPL YESSTVLAQK  360
TTMAALRHLR QIAQEFSQTN VSNSGRRPAA LRALSQRLSR GFNEALNGFT DEGWSMLGND  420
GMDDVTILVN TSPDKLMGLN LPFSNGFQSV TNSVLCAKAS MLLQNVPPAI LLRFLREHRS  480
EWADNGIDAY SAAAIRVGPC SLPGAHVGSF GGQVILPLAQ TMEHEEFLEV VKLESVVNSP  540
EEAMMPPRDI FLLQEATSPN RTLDLASALE IGPAGSKGAK DSSTSSGCVR SVMTIAFEFA  600
FESHMQEHVA AMARQYVRSI ISSVQRVALA LSPSNLGSLA GLRSSLGTPE AQTLARWINQ  660
SYRVYLGVEL LKSNSEGGGG ESILKSLWHH SDAMLCCSLK AMPVFTFANQ AGLDMLETTL  720
VALQDISLEK IFDDNGRKTL CSEFPQIIQQ GYACLAGGIC MSSMGRPASY EKAVAWKVLN  780
EEENAHCICF MFVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011426
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515977.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLB9RQF80.0B9RQF8_RICCO; DNA binding protein, putative
STRINGLus100114260.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]