PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10011495

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 118aa MW: 13362.9 Da PI: 4.4868

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10011495	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00024	33	49	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 +Cg+sFsrk+ L H+ Lus10011495 33 NCGTSFSRKDKLFGHMA 49 7**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.84E-5	2	48	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.7E-4	24	49	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MYTCSRCNKK NFSVEADLRS HFKHCGELRW KCNCGTSFSR KDKLFGHMAL FEGHMPAARE 60 EEDGGEEVKM MVQQEEDDGN GEGLLFDDGF GSMEDVLEYP ASPDWQREMS LFCGFGQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10011495

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ461513	1e-167	GQ461513.1 Linum usitatissimum clone LU0CT0E26 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021631166.1	2e-34	protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
Swissprot	Q943I6	3e-25	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A2C9UW63	5e-33	A0A2C9UW63_MANES; Uncharacterized protein
STRING	Lus10011495	2e-82	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6855	31	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	3e-26	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Lus10011495

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]