PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011569
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 230aa    MW: 25045.9 Da    PI: 9.0158
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011569genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-1991145256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++t++q   Lee F+ ++++s +++++LA++l+L  rqV vWFqNrRa+ k
  Lus10011569  91 RKKLRLTRDQSAMLEESFKHHSTLSPKQKQDLARQLNLRRRQVEVWFQNRRARSK 145
                  677899***********************************************98 PP
2HD-ZIP_I/II115.43.4e-3791180190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+++q+++LEesF+++++L+p++K++lar+L+l+ rqv+vWFqnrRAR k+kq+E d++ Lk++y++l++en++L+kev++L+++
  Lus10011569  91 RKKLRLTRDQSAMLEESFKHHSTLSPKQKQDLARQLNLRRRQVEVWFQNRRARSKLKQTELDCQLLKKCYQSLTDENNKLKKEVHQLKTA 180
                  69*************************************************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-1871145IPR009057Homeodomain-like
SuperFamilySSF466891.88E-1877148IPR009057Homeodomain-like
PROSITE profilePS5007117.32987147IPR001356Homeobox domain
SMARTSM003896.9E-1789151IPR001356Homeobox domain
PfamPF000461.1E-1691145IPR001356Homeobox domain
CDDcd000864.43E-1691148No hitNo description
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PfamPF021839.3E-8147179IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.0E-14147191IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDDNNLLLNL TLSTHRHFPA AGKPQDNSVD VGPSLTLSLL SNPRQQNPES VKKEREIVIS  60
STDDDDEEAD TTTRVSSGKV SNEDDGGGGL RKKLRLTRDQ SAMLEESFKH HSTLSPKQKQ  120
DLARQLNLRR RQVEVWFQNR RARSKLKQTE LDCQLLKKCY QSLTDENNKL KKEVHQLKTA  180
ASVETAPFYS MTVALCPSCG TKGHGGGGGG GGGGGFSKSF TNPSSSTAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011569
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028050.16e-58PREDICTED: homeobox-leucine zipper protein HAT22
SwissprotP466044e-48HAT22_ARATH; Homeobox-leucine zipper protein HAT22
SwissprotP466652e-47HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A059ALZ21e-56A0A059ALZ2_EUCGR; Uncharacterized protein
STRINGLus100115691e-169(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.12e-41HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]