PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10011645

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 226aa MW: 24485.7 Da PI: 6.496

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10011645	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.6	1.1e-43	51	150	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++Cvlapyfp +qp+kf ++h++FGasn++k+l++lpee+r da+ss+vyeA ar+rdPvyG++g i++lq+q++ l+a+la+ + Lus10011645 51 PCAACKILRRRCADKCVLAPYFPPSQPAKFSIAHRVFGASNIIKFLQELPEEQRADAVSSMVYEATARIRDPVYGCAGAISHLQHQVNDLQAQLAKSQ 148 7**********************************************************************************************999 PP DUF260 99 ee 100 ++ Lus10011645 149 AQ 150 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.973	50	151	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-43	51	148	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MEFSEAKAAT TTGNSTPSST TTNSSTSPLL PPSPDSTSSP PPPPPVVIVS PCAACKILRR 60 RCADKCVLAP YFPPSQPAKF SIAHRVFGAS NIIKFLQELP EEQRADAVSS MVYEATARIR 120 DPVYGCAGAI SHLQHQVNDL QAQLAKSQAQ VLTMQAHQAH LMAQILCLEM GHHPSPPDTF 180 IVSNDSNSIP TQTYQKQQQH ENFSSCYADD TTQLLMGPLW EPLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-41	50	152	10	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-41	50	152	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10011645

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021683852.1	5e-80	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	4e-66	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	G7IKN3	2e-77	G7IKN3_MEDTR; Lateral organ boundaries (LOB) domain protein
STRING	Lus10011645	1e-166	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-67	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Lus10011645