PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011762
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 246aa    MW: 27272.8 Da    PI: 8.1526
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011762genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.38e-17166200135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg+ kTp+WR gp g+ktLCnaCG++ ++ +l
  Lus10011762 166 CQHCGSEKTPQWRAGPMGPKTLCNACGVRCKSGRL 200
                  ******************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.107.1E-14160197IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.0E-14160210IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.78160196IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.8E-14162223No hitNo description
CDDcd002021.58E-12165213No hitNo description
PfamPF003201.5E-14166200IPR000679Zinc finger, GATA-type
PROSITE patternPS003440166191IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDFLDPAAPP CSMDDFLDFS SDIGEEDDDL TSSKPNGLSP ATFGLTDPDF PLPEYPEEEL  60
EWISNKEAFP SLETFVDIIS EHPGSLPKQN SPVSVLENST TSSNGSSGSG FIMSYCRSLQ  120
PPVKKARSKR HLKCRRDLQD PRQCWWNHDN VKSSRKPAAS KIGRKCQHCG SEKTPQWRAG  180
PMGPKTLCNA CGVRCKSGRL VPEYRPANSP TFSTEMHSNS HRKVLEMRKK KQVMGVVVVK  240
PFEKG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011762
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8298471e-116EU829847.1 Linum usitatissimum clone LU0012H03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092669.11e-104GATA transcription factor 1
SwissprotQ8LAU93e-52GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A067JC771e-103A0A067JC77_JATCU; Uncharacterized protein
STRINGLus100117620.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-48GATA transcription factor 1