PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011787
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 191aa    MW: 21937.4 Da    PI: 10.3226
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011787genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.31.5e-211153345
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  ++ks rqvtfskRr+g++KKA+EL +LC++++a+++fs+ gk
  Lus10011787 11 LNDKSCRQVTFSKRRTGLFKKAHELATLCAIQIAIMVFSPGGK 53
                 5799************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.511161IPR002100Transcription factor, MADS-box
SMARTSM004328.3E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-25277IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-211257IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGRRKIEMKM LNDKSCRQVT FSKRRTGLFK KAHELATLCA IQIAIMVFSP GGKPFCFGSP  60
DFDLISKKFL NQDQSPCVDF YNNDNNNSSG RARKMMNQKL DLLQHQIDTE KKKGDTFKEK  120
MKKPATSLGF MKLVKKMGFE ELTNIKNRSV NLQRELQRRT DEIDVLSSLL LLEGQTPIVK  180
EENRDFSYSN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-14169169MEF2C
5f28_B2e-14169169MEF2C
5f28_C2e-14169169MEF2C
5f28_D2e-14169169MEF2C
6byy_A1e-14169169MEF2 CHIMERA
6byy_B1e-14169169MEF2 CHIMERA
6byy_C1e-14169169MEF2 CHIMERA
6byy_D1e-14169169MEF2 CHIMERA
6bz1_A2e-14169169MEF2 CHIMERA
6bz1_B2e-14169169MEF2 CHIMERA
6bz1_C2e-14169169MEF2 CHIMERA
6bz1_D2e-14169169MEF2 CHIMERA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011787
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100117871e-138(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.19e-41AGAMOUS-like 29