PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011836
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 251aa    MW: 28042 Da    PI: 9.687
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011836genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.9e-12126169151
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                  +  +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Lus10011836 126 CVMRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 169
                  568***99..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-6126170IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-8127172IPR016177DNA-binding domain
SMARTSM003802.6E-4129184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-6129175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGKDACS EELSWKFVCV MVYRLRGSSF VTPLPQALTP VSSIPSAKSS  60
VNVQSVSSGE ANLSDERIFA ICGPDSSNAS PHDSPKEEQQ SHAYPDQPIK RRKRHRRKHV  120
QNQEPCVMRG VYFKNMKWQA AIKVDKKQIH LGTVGSQEEA ARLYDRAAFM CGREPNFEIP  180
EEEKEELRKF KWEEFLAITR SAINNKKHKR GMRRIGGGVV MQKMSLEANG DPMQVGLSCS  240
EEGGADSSAT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011836
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303060.25e-81ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_006386877.15e-81ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_006386878.15e-81ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_022758728.15e-81ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_022758729.15e-81ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_022758731.15e-81ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_022758732.15e-81ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_022758733.15e-81ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024451173.15e-81ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024451174.15e-81ethylene-responsive transcription factor-like protein At4g13040
TrEMBLB9GQL71e-79B9GQL7_POPTR; ERF family protein
STRINGLus100118360.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.28e-34ERF family protein