PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10011906

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 177aa MW: 19806.4 Da PI: 5.8172

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10011906	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	60.6	4.3e-19	73	170	1	97
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +Ca C rr +C+++C++ yfp ++ ++f+ ++++FG + v ++++l +e+ a+++l A+a++r+Pv G +g++++lq+q++ l+ + Lus10011906 73 RCAKCHWSRRpNCPAGCPYYDYFPPNS-EAFNKIRRVFGGKFVETIYQKLrYPEDAFVAFRALERDADAWIRNPVMGPTGTVTELQHQIQFLQDRIRI 169 6*********************987.99****************55666999********************************998876 PP DUF260 97 l 97 l Lus10011906 170 L 170 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.744	72	174	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-17	73	169	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MVTSFTDEVP IPLVNGRVEV PVPPKSSGID EGSISMTMEV SREMTEDYGS CRATGCSAVW 60 NNANDVEKVG NARCAKCHWS RRPNCPAGCP YYDYFPPNSE AFNKIRRVFG GKFVETIYQK 120 LRYPEDAFVA FRALERDADA WIRNPVMGPT GTVTELQHQI QFLQDRIRIL EGQPPV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10011906

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10011906	1e-130	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-12	LBD family protein

Link Out ? help Back to Top
Phytozome	Lus10011906