PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011935
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 201aa    MW: 23051.2 Da    PI: 9.6551
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011935genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-1881135256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq + Le+ F+ +++ ++++++ LA++l+Lt rqV vWFqNrRa+ k
  Lus10011935  81 RKKLRLTKEQSTLLENTFNVHNTFTQSQKQALAHRLNLTPRQVEVWFQNRRARTK 135
                  678899***********************************************98 PP
2HD-ZIP_I/II116.12.1e-3781168188
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                  +kk+rl+keq++lLE++F+ +++ ++++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++d+l++en++L+k+  +Lr
  Lus10011935  81 RKKLRLTKEQSTLLENTFNVHNTFTQSQKQALAHRLNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCDSLSNENRKLKKQILDLR 168
                  69*********************************************************************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-1959135IPR009057Homeodomain-like
SuperFamilySSF466896.84E-1961138IPR009057Homeodomain-like
PROSITE profilePS5007116.66577137IPR001356Homeobox domain
SMARTSM003891.5E-1579141IPR001356Homeobox domain
CDDcd000866.45E-1681138No hitNo description
PfamPF000461.2E-1581135IPR001356Homeobox domain
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
SMARTSM003402.4E-12137180IPR003106Leucine zipper, homeobox-associated
PfamPF021838.3E-10137168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MRNYSLSSSV WPPMPSAVCP PMPFAHHPPP QFSEYYYQQN HQHCHGCCNT ALVLDSHRKS  60
SPSSTVGGGD DDPQRRIYGG RKKLRLTKEQ STLLENTFNV HNTFTQSQKQ ALAHRLNLTP  120
RQVEVWFQNR RARTKLKQTE VDCEFLKKCC DSLSNENRKL KKQILDLRSG CGYNITSSPA  180
PELVICRSCQ KRNSRELHYM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011935
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885509.19e-45homeobox-leucine zipper protein HAT14-like
SwissprotP466041e-40HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1D1YQJ73e-42A0A1D1YQJ7_9ARAE; Homeobox-leucine zipper protein HAT22 (Fragment)
STRINGLus100119351e-149(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-43HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]