PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011941
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 459aa    MW: 51756.8 Da    PI: 4.9879
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011941genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-341252162102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkk++e++ed e++ ++sws+n +sfvv+d++ef+k +LpkyFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F+ gkk+ll++ik
   Lus10011941 125 FLKKTFEMVEDLETDPIVSWSKNRDSFVVWDSHEFSKFLLPKYFKHSNFSSFIRQLNTYGFRKIDPDR---------WEFANEGFQGGKKHLLKNIK 212
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
   Lus10011941 213 RRSR 216
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.6E-57121214IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-33121214IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.8E-37122214IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.7E-18125148IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-30125214IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-18163175IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340164188IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-18176188IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MNTVASEVPA ADLKCGIACV ADDEEELTTT TSLGEAEEEE RNPPPLFFNG ESEAASSSME  60
KAEEDSVMIK TVLIKQEVEE EDCDGVVKYY LKSEGRNCNG SSSSSSSSGF PKPMEGLQDS  120
APPPFLKKTF EMVEDLETDP IVSWSKNRDS FVVWDSHEFS KFLLPKYFKH SNFSSFIRQL  180
NTYGFRKIDP DRWEFANEGF QGGKKHLLKN IKRRSRYNNN NNKCHNHDHH YHKQKQQLSI  240
RVGSDLTKPS LETELDSLRN DHDLLKLEIL KLRQTHQDSE NQLVAVEERV CAAECKQIQM  300
FMFFAKATKN PAFIQRLSQR RKLDCRGEMV KKRRMLPTAE INPAPVHHPV DNNNIIINCR  360
NQARRHLAAM QSELDQVLSE SDTTATCSVS ENGSDDNPED MVSVYDLMSE DLLVDEDLDM  420
NESKLFSELE NLLGTSSSRP HSTWSGCVTG LVGNAGCA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2112321427129Heat shock factor protein 1
5d5v_B4e-2112321427129Heat shock factor protein 1
5d5v_D4e-2112321427129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207213LKNIKRR
2319333RRKLDCRGEMVKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011941
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076960.11e-124heat stress transcription factor A-2
TrEMBLA0A067KPW61e-123A0A067KPW6_JATCU; Uncharacterized protein
STRINGLus100119410.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-69heat shock transcription factor A2