PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012016
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 69aa    MW: 7130.06 Da    PI: 9.4444
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012016genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.92.9e-123559126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ykt++C++f + G C +G+rC+FaHg
  Lus10012016 35 YKTKICDNFVK-GSCTFGERCHFAHG 59
                 9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.5E-163065IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-93364IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-73460IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.3333461IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-103559IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MLTELIANIG GPSSGGGAGH VRKSSGEKHH PGSNYKTKIC DNFVKGSCTF GERCHFAHGA  60
AEMRKTAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1744491e-112JX174449.1 Linum usitatissimum clone LuBAC346C18, complete sequence.
GenBankKX0345571e-112KX034557.1 Linum usitatissimum clone 139G15_FAD2A_M5791_Scaffold931 genomic sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469689.12e-20PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_016713129.12e-20PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_017643146.12e-20PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9FG302e-16C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLA0A165G0K47e-21A0A165G0K4_LINUS; Kh domain containing RNA binding protein-nucleic acid binding, RNA binding, zinc ion binding
STRINGLus100120163e-43(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-18C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]