PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012017
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 163aa    MW: 16925.1 Da    PI: 9.4496
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012017genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.4e-12127151126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt++C +f+  G C++GdrC+FaHg
  Lus10012017 127 YKTKICERFMN-GSCSFGDRCHFAHG 151
                  9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547911.9E-1621102IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.106.6E-1726100IPR004088K Homology domain, type 1
SMARTSM003221.9E-1230100IPR004087K Homology domain
PROSITE profilePS5008414.5713195IPR004088K Homology domain, type 1
PfamPF000131.0E-113397IPR004088K Homology domain, type 1
CDDcd001051.63E-143395No hitNo description
Gene3DG3DSA:4.10.1000.106.7E-16122157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-9126156IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-8126152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.605126153IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9127151IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGGPPMPGGR MGGMRMEPHQ QPGPVPGFGD TTTTKISVDA SLAGSIIGKG GVNSKQICRQ  60
TGAKLSIRDH ETDPNLRNIE LDGTLEQVGR ASAMVRELLA NIGPPGSQGG RPSGHTGGDK  120
QHPGSNYKTK ICERFMNGSC SFGDRCHFAH GAAEMRKSGP GM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012017
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1744490.0JX174449.1 Linum usitatissimum clone LuBAC346C18, complete sequence.
GenBankKX0345570.0KX034557.1 Linum usitatissimum clone 139G15_FAD2A_M5791_Scaffold931 genomic sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021643121.12e-64zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C7C31e-58C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A165G0K41e-112A0A165G0K4_LINUS; Kh domain containing RNA binding protein-nucleic acid binding, RNA binding, zinc ion binding
STRINGLus100120171e-115(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-58C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]