PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012040
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 228aa    MW: 25212.2 Da    PI: 8.9746
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012040genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.9e-11521391198
                  HHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  11 lksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  + +++  lp kfa++h     +k+ +    +l  ++g ++e  ++  k  +  ++++GW++F ++n +ke+ ++ F+++g+s+f  ++++f+
  Lus10012040  52 GDERCKPLPIKFATKHgrklAMKEWS--NAKLCLPNGTVFEAGITAGKDHNDLWFKTGWSKFMDDNSIKEKFVLAFEYVGESRF--NIRIFD 139
                  55556789********9976555555..57788889********99999999****************************9999..888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF691037.72E-9860IPR006789Actin-related protein 2/3 complex subunit 5
Gene3DG3DSA:1.25.40.1902.9E-51158IPR006789Actin-related protein 2/3 complex subunit 5
PfamPF023623.1E-949139IPR003340B3 DNA binding domain
CDDcd100172.10E-1159139No hitNo description
SuperFamilySSF1019361.67E-1159141IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-1259141IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034314Biological ProcessArp2/3 complex-mediated actin nucleation
GO:0005885Cellular ComponentArp2/3 protein complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAGADGFVEA ENAEAIITRI EHKSRKIESL LKQYKPVEAL KTALEGSPPK TGDERCKPLP  60
IKFATKHGRK LAMKEWSNAK LCLPNGTVFE AGITAGKDHN DLWFKTGWSK FMDDNSIKEK  120
FVLAFEYVGE SRFNIRIFDL SMSKILYTPQ PPAVVAGECE ALLDELAARG IHVANKFSCM  180
TFPIISSESK RAMQEAMKNK REDDAVPSFI VVMNPCGGKN SKRPTAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100120401e-169(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-13B3 family protein