PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012045
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 222aa    MW: 25485.5 Da    PI: 9.8227
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012045genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.82.5e-101192183
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83
                 ffkv +p+    +  ++lp++f+++++ +  ++ +ltle  +g++W+v l   +++++r++l +G  +F + ++     +++++
  Lus10012045 11 FFKVILPETIQDKE-MMLPRRFMKNFKAE-FSGSELTLEVADGKTWTVGLEAeEGYRNRVWLVSGFDDFLRHHEPSRLKVCILR 92
                 78888777777766.********777544.56669***************88899999************99987777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.04E-10692IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-111092IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-101192No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSAANIPFLQ FFKVILPETI QDKEMMLPRR FMKNFKAEFS GSELTLEVAD GKTWTVGLEA  60
EEGYRNRVWL VSGFDDFLRH HEPSRLKVCI LRSTSMEITY PPLAPAPDSS ELWERLKKTK  120
NMILSCRFQY WTLEAMSANT KRAIQRAVEE KNPADISTMV ILMADHISPG TMRLPTKFTK  180
KFCSGNSDKV TLQLYEDGAN RVVRTWPAYL IVRSNQRQVA R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012045
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100120451e-166(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-09B3 family protein