PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012092
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 257aa    MW: 28041.1 Da    PI: 9.1075
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012092genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.8e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     ++rWT+eE+  l+ +++++G+g W+tI            R+  ++k++w++ 
      Lus10012092  5 KQRWTAEEEAALKAGIRKHGTGKWRTILMDPDfgpvlRIRSNVDLKDKWRNI 56
                     79***************************99999**999***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.195161IPR017930Myb domain
SuperFamilySSF466891.09E-14259IPR009057Homeodomain-like
SMARTSM007172.7E-6459IPR001005SANT/Myb domain
PfamPF002496.3E-7556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-12556IPR009057Homeodomain-like
CDDcd116608.57E-20657No hitNo description
SMARTSM005261.6E-1486151IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.40288156IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.25E-1389163IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.7E-1390159IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.5E-890149IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MRGPKQRWTA EEEAALKAGI RKHGTGKWRT ILMDPDFGPV LRIRSNVDLK DKWRNIKVMA  60
IWGSRHKAKL ALNTTPHNPE LEQSLNDLLP KLDSLIVEAI STLKEPEGSD EASIATYIED  120
KQCGVPNLRK LLARKLKLLT ATGKLIKVKQ QYRISPGSTA SEGTNGSPFL VVDGKQNTSN  180
VDKNSSKIQS MFHVEQELHR IQGMTAAEAA AVAVKAIAEA ELAIAEAEEA ARKAESAEAE  240
AEACHVFAEA AVQAFR*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012092
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633738.11e-80telomere repeat-binding factor 2
RefseqXP_021633739.11e-80telomere repeat-binding factor 2
SwissprotQ9FJW54e-55TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A251JI533e-79A0A251JI53_MANES; Uncharacterized protein
STRINGLus100120920.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.22e-48MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]