PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012209
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 775aa    MW: 84625.2 Da    PI: 4.9264
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012209genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07715763445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHT....TTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmg....kgRtlkqcksrwq 45 
                      WT+ E+  l++av+++ +    +Wk+I ++       gRt ++++s+w 
      Lus10012209 715 WTAPEENMLKEAVQKFTKSgitSWKAIIEYGRsvfpAGRTSEDLRSKWK 763
                      *****************99*********99999999************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.44E-9293356IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.2E-7307359IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002491.4E-5311356IPR001965Zinc finger, PHD-type
PROSITE profilePS500907.666707766IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-7707769IPR009057Homeodomain-like
SuperFamilySSF466891.12E-7709767IPR009057Homeodomain-like
SMARTSM007171.3E-4711768IPR001005SANT/Myb domain
PfamPF002495.2E-6714764IPR001005SANT/Myb domain
CDDcd116606.95E-8715767No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MSEPSPPDGD TSRVWFWLIE YMASSPQIDC TTLHNLIEEA PELPNNVRER VALRCLEELF  60
GTSHAVAHEP PSGTEAKVVF ELSSTCEDVL ELICRETSDL RKGGPELLKW DIHPFIMHKK  120
ASMPKCSFDQ LKEMTRQGSV PCAALFSQFS GLVHGNDGGS KSTMEEPGQS EGLRTDCQTE  180
VSREESLSQP PANGLAGIGE NMCYSNLSSS ERGEICGNQG GVSLGRQGND AAAYCQLADA  240
ESIEQGTLYT EMANNNNLVE HSMQGNIQVG EDENSDLGAE SQRGVTMEGR EESGLLSKDF  300
LAAADQPGSN LCVKCGKNGQ LLLCGTDGCT FTIHGSCLGL TPSFDNRGQF CCPFCAHDLA  360
ISYYEKMKER MDVTLKQLSS FLRGGSENPS LEHSKRSDGK ENGKPGGVAS VAEVNRIENL  420
AKEGNQTYSG RDVDEVYDYL FENGAGRLQH FPVAAHGITD KPNSEKVLAD ATCNSRDSGE  480
RQMERTAIVC PLVRVPERRQ DQDISDPSRL GDKVSEEQDQ AEGETTKKVP DEIGVHKQVM  540
RIPAVPTFEN GAGRLKLPPV AAHGTDGEPN SEQGPSDTIC NSRGSGERQI ERKTFACASV  600
KVPEGKQDQD LPDSMCLDDN LSREKKDITS EEQDQTEGAT KKKVPDAINV HQQVIPIPAV  660
PIGRVASDEG HDQTASSTYS LHLRKRERGT SLNEHYCMSS EDAASPRTRR RKVLWTAPEE  720
NMLKEAVQKF TKSGITSWKA IIEYGRSVFP AGRTSEDLRS KWKSICKVKA PKSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012209
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100122090.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224