PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012457
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 253aa    MW: 28902.2 Da    PI: 9.4444
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012457genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.1e-1385132355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Lus10012457  85 QDHVIAERKRREKLSQKFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 132
                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.94882131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1085132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-1785148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1786147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-1187136No hitNo description
SMARTSM003537.1E-1588137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEDHSHFINQ WRQMESSNNS SFGVPTLENG LFNTTMPSHH HALEMGFLKP KQETAENMYL  60
SQQNWFGNHH NIISKGRIRM SQQSQDHVIA ERKRREKLSQ KFIALSAIVP GLKKMDKASV  120
LGDAIKYLKQ LQERVKTLEE QTRNKSMESA KVVVKKSQVF DECGSSEQLP EIEARFSDRH  180
VLIRVHCEKK KGLLEKTVAE IEKLHLTVIN TSVLTFGSSA LDLTIITQMD VEFNMTVKEV  240
VQKLHPAFSL FN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1486135857Transcription factor MYC2
5gnj_B2e-1486135857Transcription factor MYC2
5gnj_E2e-1486135857Transcription factor MYC2
5gnj_F2e-1486135857Transcription factor MYC2
5gnj_G2e-1486135857Transcription factor MYC2
5gnj_I2e-1486135857Transcription factor MYC2
5gnj_M2e-1486135857Transcription factor MYC2
5gnj_N2e-1486135857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095ERKRRE
29196RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012457
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486799.12e-91transcription factor bHLH25-like
RefseqXP_015388301.12e-91transcription factor bHLH25-like
SwissprotQ9T0722e-57BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2H5QA055e-90A0A2H5QA05_CITUN; Uncharacterized protein
STRINGLus100124570.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-60bHLH family protein