PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10012545

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

M-type_MADS

Protein Properties

Length: 77aa MW: 8410.72 Da PI: 10.3978

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10012545	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.7	3.2e-28	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +ie+ks rqvtfskR+ g+lKKA+ELSvLC++evav+ifs gklye+s Lus10012545 10 PIEDKSTRQVTFSKRKRGLLKKAQELSVLCGVEVAVVIFSGGGKLYEFS 58 79**********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.2E-34	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.002	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-27	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-25	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-26	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MGRGKVEMRP IEDKSTRQVT FSKRKRGLLK KAQELSVLCG VEVAVVIFSG GGKLYEFSGG 60 ERYIVSSNSN SILYHS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-17	1	61	1	61	MEF2C
5f28_B	1e-17	1	61	1	61	MEF2C
5f28_C	1e-17	1	61	1	61	MEF2C
5f28_D	1e-17	1	61	1	61	MEF2C
6byy_A	1e-17	1	61	1	61	MEF2 CHIMERA
6byy_B	1e-17	1	61	1	61	MEF2 CHIMERA
6byy_C	1e-17	1	61	1	61	MEF2 CHIMERA
6byy_D	1e-17	1	61	1	61	MEF2 CHIMERA
6bz1_A	1e-17	1	61	1	61	MEF2 CHIMERA
6bz1_B	1e-17	1	61	1	61	MEF2 CHIMERA
6bz1_C	1e-17	1	61	1	61	MEF2 CHIMERA
6bz1_D	1e-17	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10012545

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021657833.1	8e-27	MADS-box transcription factor 8-like
Swissprot	Q38837	1e-23	AGL13_ARATH; Agamous-like MADS-box protein AGL13
TrEMBL	A0A446SDJ2	1e-25	A0A446SDJ2_TRITD; Uncharacterized protein
STRING	Lus10012545	7e-48	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61120.1	6e-26	AGAMOUS-like 13

Link Out ? help Back to Top
Phytozome	Lus10012545

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]