PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012557
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 254aa    MW: 28019.6 Da    PI: 8.0117
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012557genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.63.1e-33141491128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......tksgyWkatgkdke 91 
                  lp G+rF+Ptdeel+v+yL++kv g +l++ +vi+e+d+++++P +Lp + +a  ++ yfF+k+d +   g   nr           gyWk+tgk ++
  Lus10012557  14 LPIGYRFRPTDEELIVHYLRRKVLGLPLPA-SVISELDVFHTHPCSLPGN-SACWEKRYFFCKKDGNVVAGA-GNRGggvsscgGGGGYWKHTGKARH 108
                  699***************************.99***************43.2345678*******9988654.33322334443459*********** PP

          NAM  92 vlsk...kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                  ++s+   +++lvg+++ Lvf k+  + + ++t+W mhe+ l
  Lus10012557 109 IVSSsttNNQLVGMRTRLVFRKQnASDHHSNTKWAMHEFCL 149
                  **998888888**********7725556789********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-408177IPR003441NAC domain
PROSITE profilePS5100539.09514177IPR003441NAC domain
PfamPF023652.1E-2115148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDMEAKPNMV VKELPIGYRF RPTDEELIVH YLRRKVLGLP LPASVISELD VFHTHPCSLP  60
GNSACWEKRY FFCKKDGNVV AGAGNRGGGV SSCGGGGGYW KHTGKARHIV SSSTTNNQLV  120
GMRTRLVFRK QNASDHHSNT KWAMHEFCLV GLATIPFTNQ VVKVQLGDWV VCSVFQKKKR  180
PSYNNRKKPP NPIEFRMEEL SDRGPEEEEE EEPCSSPCSS GVTELSNSTS YLSNGLDGEG  240
DINSFNVSFS SSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-2221788169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012557
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9RH275e-57B9RH27_RICCO; Transcription factor, putative
STRINGLus100125570.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.13e-33NAC domain containing protein 84