PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10012603

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 185aa MW: 20522.2 Da PI: 6.3616

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10012603	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.1e-13	2	50	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i A++++k+L+ Lus10012603 2 THITVERNRRRQMNEHLNSLRSLMPPS---YGQRGDQASIIGGAIDFVKELE 50 899**********************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.68E-10	1	54	No hit	No description
PROSITE profile	PS50888	14.875	1	49	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-10	2	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-15	2	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-13	2	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-9	4	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MTHITVERNR RRQMNEHLNS LRSLMPPSYG QRGDQASIIG GAIDFVKELE QLAQCLDAQK 60 RMKLGEMTRT TAAAEEGEAE EGRVRAAVEK SEAAEIEVTA IQNHANLKVK CERRRGQLVR 120 AIVGLEELGL TVLHLNIASS SSSTIFYSFN LKIEEECKIG SADEVAAAVH QIFTDYQQQQ 180 RLPT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10012603

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024450771.1	7e-77	transcription factor bHLH70 isoform X3
Swissprot	Q9M128	4e-64	BH057_ARATH; Transcription factor bHLH57
TrEMBL	A0A2K2BKL1	2e-75	A0A2K2BKL1_POPTR; Uncharacterized protein
STRING	Lus10012603	1e-133	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6894	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01460.1	4e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10012603

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]