PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10012619

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Dof

Protein Properties

Length: 355aa MW: 38483.8 Da PI: 8.2679

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10012619	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	74	135	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Lus10012619 74 PQEQVNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTAGGSLRNVPVGGGSRKNKRSSS 135 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-23	73	123	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-33	76	132	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.134	78	132	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	80	116	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MDAAQWPKDI NLARPMEEMV ASASNINTNN YMTNNNNNNN NNNNNNNSNL SGNIPKVGGE 60 TGGDVQNKKA AVRPQEQVNC PRCNSTNTKF CYYNNYSLTQ PRYFCKSCRR YWTAGGSLRN 120 VPVGGGSRKN KRSSSLPSSS SITNTTTSSS SGINKLTTIP DLNPPSFSSQ NPKAFQGQDL 180 NLGFPPIHQD TTHQGLEVLR SNGMAGNNPT RGLNSFITNP TMASGTDNNR HPNPVLYSSN 240 ISSSSSAAGF HMQEEFKPPT LNFSIDHHQQ QQQHHHGIDQ HDESGGEMDN VGRILFPFGD 300 HHHHLLKQQQ QHQIPGDKGQ QEHGHHVDHN NNSGGGGGGG GGYWSGMLGG SGAW*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MDAAQWPKDI NLARPMEEMV ASASNINTNN YMTNNNNNNN NNNNNNNSNL SGNIPKVGGE  60
TGGDVQNKKA AVRPQEQVNC PRCNSTNTKF CYYNNYSLTQ PRYFCKSCRR YWTAGGSLRN  120
VPVGGGSRKN KRSSSLPSSS SITNTTTSSS SGINKLTTIP DLNPPSFSSQ NPKAFQGQDL  180
NLGFPPIHQD TTHQGLEVLR SNGMAGNNPT RGLNSFITNP TMASGTDNNR HPNPVLYSSN  240
ISSSSSAAGF HMQEEFKPPT LNFSIDHHQQ QQQHHHGIDQ HDESGGEMDN VGRILFPFGD  300
HHHHLLKQQQ QHQIPGDKGQ QEHGHHVDHN NNSGGGGGGG GGYWSGMLGG SGAW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10012619

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10012619	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	1e-44	Dof family protein

Link Out ? help Back to Top
Phytozome	Lus10012619