PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013052
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 511aa    MW: 54646 Da    PI: 6.5142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013052genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09337385355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Lus10013052 337 NSHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 385
                  58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-17332403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.87E-11332389No hitNo description
PROSITE profilePS5088815.618334384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-17335401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6337385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11340390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MEMDISEKGK SDMDKRNGDN PMNYDSSGAL SSDWRFGTNA AAPILVPGDG QMTSCSSASM  60
GESFGPPPGL WDHQTSSHNI GFCDINIQNS GGTGTPVGMV RGGPASMSWN QPSSMLRDSG  120
IFLPNAGILP PSLSQFPADP AFIERAARFS CFNSVNYGDH MAHPFGISEP PMGLYSRAAG  180
GMMQVLPQEV FVGSGLKSLS GGPSLHTDHA KIEDTPLKSE RKSESLVRSH DDVKPGGNDS  240
DEAEFSGGGG GGQDDTTMLE ANGGKSSAKG IESKKRKRNG QDTKNEGTKG GSEIQQKGGK  300
NQGSANHKAS GKNGKQGSPP PKEDYIHVRA RRGQATNSHS LAERVRREKI SERMKLLQDL  360
VPGCNKVTGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP RLDFNLEGLL AKDILSRAIP  420
SAGLSFSPDM PMSYHPPLHP SQPDGFPVME SHHSDILRHS IASSAAEFKD PAQQLPGSWN  480
EELHNVMQMY ASNVPQGSQE ISAGDMKTEL *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013052
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572050.10.0transcription factor bHLH49 isoform X2
TrEMBLB9RLE70.0B9RLE7_RICCO; Uncharacterized protein
STRINGLus100130520.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-101bHLH family protein