PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013277
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 275aa    MW: 31246.8 Da    PI: 4.3376
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013277genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-1864120157
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  r+k++++t +q++ Le+ Fe ++++  +++ +LAk+lgL  rqV +WFqNrRa+ k+
  Lus10013277  64 RCKKRRLTVSQVQFLESSFETENKLEPDRKVHLAKELGLHPRQVAIWFQNRRARFKN 120
                  678889************************************************995 PP
2HD-ZIP_I/II124.26.3e-4066157293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkrrl+  qv++LE+sFe+e+kLep+rKv+la+eLgl+prqva+WFqnrRAR+k+kqlEkd+++L+ ++d+lke+ ++L +e+++L++++++
  Lus10013277  66 KKRRLTVSQVQFLESSFETENKLEPDRKVHLAKELGLHPRQVAIWFQNRRARFKNKQLEKDFDSLRFSFDRLKEDYDSLLQEKQSLETQVRS 157
                  9**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-1955123IPR009057Homeodomain-like
PROSITE profilePS5007117.11961121IPR001356Homeobox domain
SMARTSM003892.7E-1864125IPR001356Homeobox domain
PfamPF000461.1E-1564119IPR001356Homeobox domain
CDDcd000861.20E-1666122No hitNo description
Gene3DG3DSA:1.10.10.606.9E-1968128IPR009057Homeodomain-like
PRINTSPR000311.7E-592101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5101117IPR000047Helix-turn-helix motif
PfamPF021836.4E-15121162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MASGSGINGF DLLSCGHLWI PSPALNLQGF ENVDGGEVND GEFCSPHGKE ELCDEDFELG  60
SSPRCKKRRL TVSQVQFLES SFETENKLEP DRKVHLAKEL GLHPRQVAIW FQNRRARFKN  120
KQLEKDFDSL RFSFDRLKED YDSLLQEKQS LETQVRSLKE KLDTEEDFKT ATFQVPMSQL  180
AIVSPEASKS EVNYSVSPHS VLMDPNESSQ VFEENQSDYF SQDEDEFLMM AATTNCFRND  240
DKPLPAVLSS SCGGFEFPVE DQPFNLVLDL MNWM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARFKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013277
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091954.15e-68homeobox-leucine zipper protein ATHB-54
TrEMBLA0A067JML61e-66A0A067JML6_JATCU; Uncharacterized protein
STRINGLus100132770.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-37homeobox 1