PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013284
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 261aa    MW: 28746.8 Da    PI: 6.1632
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013284genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.19e-10143190455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Lus10013284 143 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 190
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-17137208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.98E-9137194No hitNo description
Gene3DG3DSA:4.10.280.101.2E-17139207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-7143190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-10145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDPRGLMNDE SFNLAEIWQF PLNGNGRGQF GQSLAHFADS ATGRDSDLVN LESRGGLRKR  60
LDLEDESGKG VSTSNGNGSG NGLSESDGKR LKRSASRDDN CESKVETEEL SSGKPVEQKG  120
QPSEPPKQDY IHVRARRGQA TDSHSLAERA RREKISERMK ILQDLVPGCN KVIGKALVLD  180
EIINYVQSLQ RQVEFLSMKL EAVNSRMTPG IDVYPSKDFG QQTFDNSGMA YGSQTTREYS  240
RGASPEWLHM QIGSGFERTS *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013284
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616639.11e-131transcription factor BHLH089-like
SwissprotQ69WS33e-80BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2C9WPL11e-129A0A2C9WPL1_MANES; Uncharacterized protein
STRINGLus100132840.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-99BIG PETAL P