PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013297
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 222aa    MW: 24430.2 Da    PI: 5.1517
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013297genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.7e-071053344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +W+ eEd+ +  a   ++ g   +W++Ia +++ g+++  +  ++
      Lus10013297 10 SWSWEEDKEFETALVTFPDGtpdRWEKIAGKLP-GKSADYVLKHF 53
                     6*****************99*************.**987666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.8E-4759IPR001005SANT/Myb domain
SuperFamilySSF466893.83E-91061IPR009057Homeodomain-like
CDDcd001672.08E-51046No hitNo description
PfamPF002499.2E-61054IPR001005SANT/Myb domain
PROSITE profilePS500906.1331057IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MLAGESLVRS WSWEEDKEFE TALVTFPDGT PDRWEKIAGK LPGKSADYVL KHFEDLVLDV  60
MAIDGDLVQV PDYVDDGLSW RRFNGGGDGP TEGISNDGGH VAGTWVGYPP KRRRRGRREL  120
LGRQRSTASG LLMNQTASER ATWCYLRKER KRSSIHDVIH DSSEGTASSL GDIQPAAPQG  180
TGFQGLLSGL WADIEAQIMT DLLPAFDHEH RSINSEGFSK S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111118RRRRGRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013297
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100132971e-161(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-16MYB family protein