PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10013350

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Trihelix

Protein Properties

Length: 84aa MW: 9015.03 Da PI: 9.6929

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10013350	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.9	4e-11	39	76	2	39
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmr 39 Wt+q++ +Li+a++e++ l+rg+lk+++Weev++++ Lus10013350 39 WTHQQTVHLIQAYQEKWYGLNRGQLKATHWEEVAAAVV 76 **********************************9984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.0E-7	38	78	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MSTPSPSSSS PPPNQPQSSS TPYSPAPPIS GKKPQPVPWT HQQTVHLIQA YQEKWYGLNR 60 GQLKATHWEE VAAAVVSRCG HNG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10013350

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021678170.1	8e-24	trihelix transcription factor ASIL1-like
Refseq	XP_021678171.1	8e-24	trihelix transcription factor ASIL1-like
Refseq	XP_021678172.1	8e-24	trihelix transcription factor ASIL1-like
Refseq	XP_021678173.1	8e-24	trihelix transcription factor ASIL1-like
Refseq	XP_021678174.1	8e-24	trihelix transcription factor ASIL1-like
TrEMBL	A0A2C9UP25	4e-22	A0A2C9UP25_MANES; Uncharacterized protein
STRING	Lus10013350	3e-53	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	2e-15	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Lus10013350