PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10013510

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 241aa MW: 26839.4 Da PI: 6.5789

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10013510	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118	5.8e-37	28	125	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkCa+dC+lap+fp +++k+f n+hklFG+sn+lk+++++ +++r am++++ eA++ra dPv G++ +il+lq q++ l+a+l+ll Lus10013510 28 ACAACKYQRRKCAPDCPLAPHFPPNHHKEFYNAHKLFGVSNMLKIIRDVTPSNRYLAMKTIIHEANVRALDPVGGCYHMILRLQYQIKFLEAQLDLLL 125 7********************************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.509	27	128	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-35	28	123	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MSHPPPPHKG LLVSSSSSSS SSSSGSQACA ACKYQRRKCA PDCPLAPHFP PNHHKEFYNA 60 HKLFGVSNML KIIRDVTPSN RYLAMKTIIH EANVRALDPV GGCYHMILRL QYQIKFLEAQ 120 LDLLLRQLAF FQSLSPFNDD IPQKEGSQVM GLQSLIDFEQ QDHLQRGKEE EDGVVVEKSC 180 SEPDAYKVFD NMSVKIEMEE SPGQGKASSS QLLKQEEGNS YVVVGDFEQN ERNHIPVGLH 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-24	18	122	1	105	LOB family transfactor Ramosa2.1
5ly0_B	6e-24	18	122	1	105	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10013510

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020224993.2	4e-45	LOB domain-containing protein 22
STRING	Lus10013510	1e-178	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	8e-37	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Lus10013510