PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10013586

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Dof

Protein Properties

Length: 289aa MW: 31365.5 Da PI: 6.8393

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10013586	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.2	1.3e-36	32	88	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ Lus10013586 32 TPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRP 88 568**************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.63	33	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.6E-31	33	87	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-22	35	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDIGAARDSG GMFWTEPPPP LTNIGGAVER TTPSCPRCGS SNTKFCYYNN YSLTQPRYFC 60 KGCRRYWTKG GSLRNVPVGG GCRKSRRPNN HHNNNNNKSS SSSSFKISYN SRRLSHDKTT 120 TTTTTYTAAP PDQHHQNGSH IDLATVYAKF LNNSTNGAND TLLPSTNNPM EGASISLSAA 180 TSSSATSLFS SSMMAVNLPL LHLPPGGGVD DQLMMYYCGG GGLNNNYELP LLPGEEDIFQ 240 LDPPRHQVVG TQNDDQEQHP IPDDGESNDH LMMIGNYWSS FELSNVTG*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10013586

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10013586	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	4e-33	Dof family protein

Link Out ? help Back to Top
Phytozome	Lus10013586